PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239749.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 187aa    MW: 20918.2 Da    PI: 9.7835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239749.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81e-091567655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksLq 55
                    + +Er+RR +++   ++L +l+P+  ska++ K  ls    L +A  YIk+L+
  XP_008239749.1 15 KTVERNRRIHMKGLCFKLASLVPPqHSKASNSKdtLSQQNQLDLASSYIKQLR 67
                    679*********************88877777768****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.89E-4771No hitNo description
PROSITE profilePS5088810.194966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-101384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-101383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-71566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKKCSGESSS KLDRKTVERN RRIHMKGLCF KLASLVPPQH SKASNSKDTL SQQNQLDLAS  60
SYIKQLRERI ENLKERKEKA MRSQLGMDAN STIDADNAMM VRSRLPVIEL KDSGSVIEVM  120
LISGLNKNFM LYEVIGVLEE EGAEVISASF STVGDKVFHS LHAQVLKHSI KLINDVNLIV  180
FLTINSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4672384e-41AM467238.2 Vitis vinifera contig VV78X066099.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239749.11e-135PREDICTED: uncharacterized protein LOC103338332 isoform X1
TrEMBLM5WEP81e-113M5WEP8_PRUPE; Uncharacterized protein
STRINGPOPTR_0012s08050.11e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-31bHLH family protein